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ChemBob boosted

@freemo I thought we were talking about guns. So, I'm going to continue to talk about guns.

People don't need guns and shouldn't have easy access to them. Japan does not have a citizenry with access to guns, therefore, they do not have much gun violence. It's a simple argument.

ChemBob boosted
ChemBob boosted

I couldn't be happier that Fox apparently threw out Tucker Carlson, but that does not in any way absolve them of any of their crimes - fraud, defamation, sedition and others counted amongst them.

ChemBob boosted

Very good news.

"The EU is planning a compulsory licensing system to allow it to take control of the manufacture of drugs and vaccines during a public health emergency, despite calls from pharmaceutical groups to protect patents"

ft.com/content/b777f019-ff02-4

ChemBob boosted

There are two philosophies in toward handling questionable . The first is to check the of the data every time it's used. This takes a fair amount of time, and depending on the size of the data may also take a fair amount of time. It's a PITA to write, test, debug, and run.

The second is to say "I've already checked this data a bunch of times in the program, it's fine" and skip the integrity checks after the first time. In programming, this is particularly tempting: the data sets are huge, and writing checks is annoying. The whole thing feels like a waste of time when you're reasonably sure your code will never run on anything except this particular data set which you already see more of than your family and your pets and you just want to get the damned thing done.

About 95% of the time, I take the first approach. Every time I do it, I'm grumbling to myself. Just finish it, already! And I am uneasily aware that those who take the second approach get their work done faster than I do.

Yes. This is true.

They also get a lot of results—many of which don't look like garbage at all. Here comes the ritual chest-thumping ... in , and generally, those mistakes don't just lead to flawed publications, as bad as that is. Garbage results kill people.

I just received a lesson in why the first is a really good idea. Let's be careful out there.

ChemBob boosted

A heads up on the #CDC updates on the variant proportions of #SarsCoV2 through April 22, 2023. It shows that Arcturus (XBB.1.16) is at about 10% prevalence nationally with some areas as high as 19%. Region 6, which includes Texas and the surrounding states, is showing the highest average with nearly 15% prevalence. That is almost double the 8% reported last week. The pace of spread will likely increase towards the 5 1/2 to 6 day doubling rate seen in India. open.substack.com/pub/tactnowi

I’m sitting here reading toots with my Apple TV displaying a beach for its screensaver when I should be reviewing and grading student research papers that are due tonight. This tiny bit of luxury must end before tomorrow morning. The semester is about to come to a screeching halt.

ChemBob boosted

"We’re developing open source industrial machines that can be made for a fraction of commercial costs, and sharing our designs online for free. The goal of Open Source Ecology is to create an open source economy – an efficient #economy which increases innovation by open collaboration."

opensourceecology.org/

#technology

ChemBob boosted

RT @LakatosLab
Please RT. Postdoctoral Research Associate positions are open in our lab in Cambridge: 1 in Computational Neurobiology; 1 in Human Organoid Neurobiology at the intersection with neurodegeneration research (MND/ALS). Please see: jobs.cam.ac.uk/job/40520/jobs.cam.ac.uk/job/40536/

ChemBob boosted

#christmas #easter #valentines, #birthday #wedding #BlackFriday & Funeral after "parties" are times for companies to sell us more stuff. We can now add #EarthDay to that shop-till-the-planet-drops list.

"Earth Day...More often than not, as an environmental reporter, it means sifting through a million announcements from companies shouting about how they’re trying to save the planet

Alas, most of the stuff I see is just #greenwashing

theverge.com/23688450/earth-da

#ecology #sustainability

ChemBob boosted

If Musk "is Trump" (psychopathic) and you 'bring value' to his business with your participation, what message does it send to an outside observer? How is society shaped by the participation of hundreds of millions, including most all major press and the influential? What does that reveal about our values?

ChemBob boosted

5. Apocalyptic visions are always described (here "a fallen and dangerous world"). These are the fantasies of an adult child that has watched so many end of the world movies they are now casting themselves as the hero in their own.

6. There is almost always a paragraph that begins with "Thankfully," -- this is where they'll tell you the gun didn't do anything.

4/

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Sorry the paragraphs ran together. They weren't until I posted it.

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This is an announcement I posted to my Intro to Environmental Science course this morning at one of the colleges where I teach. It relates to Lamarck, Darwin, natural selection, and epigenetics. Any comments about it?

Hi Class,
A student in an earlier course asked me a question and I thought it was worth providing all of you my answer.
The question was:
"On page 5.2 of the book, it states that Jean Baptiste’s idea of inheritance of acquired characteristics was wrong. When it gets to the section about giraffes on the same page, there appears to be a contradiction to the previous statement. It states that giraffes with long necks passed the trait to their offspring. I am confused. Can you help me understand?"
Here is my answer:
Lamarck’s concept of the inheritance of acquired characteristics has been controversial for centuries and, even though Darwin conceived of natural selection, he also thought Lamarck’s concept was correct. It turns out that neither of them are entirely wrong, but It is a bit complex, especially with certain new findings. Let’s start off as simple as I can and hope it makes sense. This is one of those things I miss about not teaching all of you in the classroom.
Essentially, the idea of acquired inheritance is that an animal that was normally adapted to its surroundings encountered a change in the environment that forced it to do something differently within its lifetime, essentially immediately, that was passed on to it’s offspring as an entirely new characteristic. For example, the leaves on the lower portions of the trees are all gone so the animal, let’s refer to them as giraffes even if they were giraffe ancestors at this time, stretches its neck to reach the leaves that are slightly higher. It has forced its neck to be longer and its its acquired longer neck will now be passed on to its offspring.
Natural selection has a different take on this that has made more sense due to genetics. In this case, if all the giraffes can already stretch their necks like that, then no big deal, right? However, if only a single or a few giraffes can stretch their necks and therefore be able to eat, while the others die from starvation, the eaters had something in their genetics, a mutation, that was different from the majority of giraffes. Because the other “normal” types had died of starvation, the longer-neck giraffes survived and reproduced more successfully, passing on the gene for the longer neck structure to it’s offspring (probably not all of them, due to how genes shuffle about during formation and joining of the gametes, but some number off them get the gene). The offspring lucky enough to get the longer-neck gene will survive while the offspring who don’t get it will mostly die off without reproducing during that generation as well. With each successive generation, the long-neck gene becomes more dominant in the population until almost all the giraffes have the slightly longer neck. One can imagine that if the leaves only become available even higher up the tree as time goes on, that giraffes with longer and longer necks are favored by selection. This has been the established orthodoxy about inheritance and is probably nearly 100% accurate for this type of change in an organism.
Now there is a concept called epigenetics, which modifies things a bit. Epigenetics addresses the idea that certain genes for characteristics of the organisms are already present in an animal line, but not being expressed (i.e., they are not turned on or they are turned off, sort of like a light switch). Here is a good definition from Collins and Roth, 2021:
“Epigenomics, a field examining changes in gene expression as a result of environmental context, has provided evidence suggesting that both intergenerational and transgenerational inheritance of stress programming are observed phenomena.”
Basically what they are saying is that certain types of stressors in the environment can actually change what is expressed by your genes by altering the chemistry of portions of the DNA that are passed on to the offspring. It causes a change in the phenotype (physical/behavioral) without changing the genotype (the sequence of genes). The environmental stressor determines what parts of the genotype are read and expressed and what parts aren’t. One chemical change (there are others) is adding a methyl group to the DNA that alters gene expression. In fact, these changes can be transmitted in the gametes and persist across generations, affecting not only the organisms offspring, but the offsprings progeny as well and so on. In other words the change is transgenerational. Some diseases can be inherited this way; certain cancers are suspected.
So a stressor in the environment can cause a change in how the genes are expressed that can then be passed on to its offspring. It sounds a little Lamarckian, doesn’t it? It’s just that this is not the type of change (as far as I know) that can result in huge anatomical changes, such as longer necks.
I will close by giving you a quote from Weinhold (2006) that provides some epigenetic examples:
“Today, a wide variety of illnesses, behaviors, and other health indicators already have some level of evidence linking them with epigenetic mechanisms, including cancers of almost all types, cognitive dysfunction, and respiratory, cardiovascular, reproductive, autoimmune, and neurobehavioral illnesses. Known or suspected drivers behind epigenetic processes include many agents, including heavy metals, pesticides, diesel exhaust, tobacco smoke, polycyclic aromatic hydrocarbons, hormones, radioactivity, viruses, bacteria, and basic nutrients.”
I hope this makes sense. Let me know if you would like to discuss it further.
Reference Links
sciencedirect.com/topics/bioch
Inheritance of Acquired Characteristics - an overview | ScienceDirect Topics Nicholas Collins, Tania L. Roth, in Developmental Human Behavioral Epigenetics, 2021. Abstract. Conflicting ideas surrounding the inheritance of acquired characteristics is not new; for nearly two centuries, debate surrounding the validity and mechanism behind inheritance of acquired characteristics was pioneered by Lamarck, Darwin, and Weismann. . Epigenomics, a field examining changes in ... sciencedirect.com
ncbi.nlm.nih.gov/pmc/articles/

Epigenetics: The Science of Change - PubMed Central (PMC) Other Drivers of Change. Substances aren’t the only sources of epigenetic changes. The licking, grooming, and nursing methods that mother rats use with their pups can affect the long-term behavior of their offspring, and those results can be tied to changes in DNA methylation and histone acetylation at a glucocorticoid receptor gene promoter in the pup’s hippocampus. ncbi.nlm.nih.gov

ChemBob boosted

America’s Tragedy Is Its Culture of Fear—Armed With Millions of #Guns

“Patriotic” culture warriors are terrified of drag queens, “illegals,” and extremely rare vaccine injuries. But tens of thousands of annual gun deaths—meh.

thedailybeast.com/americas-tra

ChemBob boosted

@ChemBob hahaha! That hadn’t crossed my mind. Let’s start that conspiracy theory and watch it spread 😂😄

ChemBob boosted
ChemBob boosted

"We’re Still Getting Our Pandemic Preparation Horribly Wrong"

"Until we focus on the combustible social conditions that made Covid so devastating, we’ll never be truly ready for the next pandemic."

thenation.com/article/society/

I like consulting with lots of exploratory data analysis and/or there are complex relationships to sort out. I have multiple software tools to support such quests.

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ChemBob boosted

The top 5 measures to halve emissions by 2030 as identified by IPCC are wind, solar, energy efficiency, stopping deforestation, and cutting methane emissions. This require no new technology but lacks political will.

Read more on this IPCC climate optimism chart:
theguardian.com/environment/20

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