Reproducing bioimages and data analysis is a problem in the scientific world. No guidelines on how to do this, nor do journals have any recommendations for authors, until now! We have teamed up from around the world and developed a checklist to help make science reproducible👇
http://arxiv.org/abs/2302.07005
Reboosts appreciated
Just finished my first test using #shiny with #python!
I am thinking of creating a few of these for my image analysis course (because there is not enough stuff to do already 🤣)
Here it is
https://apps.nicolaromano.net/BitDepth/
And code here, feel free to modify/reuse at will!
https://github.com/nicolaromano/BIA4/tree/main/Apps/BitDepth
Do you use anything similar? Do you find it effective?
Basically I feel a little silly even posting this, because to me it's obvious. It's like there is a big red button that says "Fascism" and I'm like "do I really need to say that I think pushing that button is a terrible idea?"
But just in case? Under no circumstances should we push the big red button.
Elect Biden again and proceed to make him *miserable*
Better than being too miserable to get anything done.
#Introduction Hello. I'm a law prof, a philosopher, a progressive. I've deactivated #twitter and am searching for a new place to learn and to think out loud. #politics #law #democracy #elections #art #literature #history #science #books
@Brokar @natematias I guess a lot of people would notice, given how much Airbnb is used... Not saying it's necessarily a bad idea, but I doubt it's the solution to the housing crisis
#preprint alert 🚨
Can Large Language Models solve common #BioImageAnalysis coding tasks? And which #LLM performs best? 🙃🤓
Great collaboration with Christian Tischer, Jean-Karim Hériché and Nico Scherf
🔬🖥️🅰️ℹ️🤝🚀
https://www.biorxiv.org/content/10.1101/2024.04.19.590278v3
🌟 Exciting news! Just a week to go until #SciPy2024! 🎉 Stay tuned over the next few days as we reveal some of the amazing things our speakers will be presenting at the conference 👀
"But whilst it will have its benefits, the process of datafication also raises important methodological and ethical questions. Who has access to the data that is collected and why? How do the new data flows change everyday research practice? Are scientists being subjected to “dataveillance”, and if so, what does this mean for their privacy? To ensure that the scientific community embarks on a critically informed journey towards a datafied research ecosystem, these questions need to be addressed."
https://www.embopress.org/doi/full/10.1038/s44319-024-00153-2
“On AI and the commoditisation of design – Scott Riley”
https://www.scott.is/writing/about/ai-and-design
> That’s because I know the value good design can bring to a project, and it’s not the output. Design is about humans, about sense-making, systems thinking, and craft
« In this Comment, we emphasize the complexity of scientific software as a multifaceted socio-technical (and historically grown) system. We describe facets of software that we define as vantage points from which the different dimensions of software can be understood. The multifaceted nature of software implies that the work done by software has technical, legal, sociological and epistemic consequences. »
appreciated this essay about “technical” skills by Sasha Laundy (“If you've ever said "soft skills" and felt weird about it, this essay is for you”) https://sashalaundy.com/writing/technical-skills/
Any Shiny for Python experts out there? I'm starting to play around with it; I've deployed my app to a DigitalOcean droplet running Shiny Server and pointed /etc/shiny-server/shiny-server.conf to a venv I want to use.
That works like a charm, but I'm wondering if I would be able to use multiple environments in case I wanted different apps to use different package/Python versions. Not a deal-breaker (and honestly I don't have a use case right now, but still...)
You can now watch the talk on "The Perfect Python Project" that I gave on Saturday at North Bay Python on YouTube. Please share and enjoy. https://www.youtube.com/watch?v=kcfERM6fcgU
Has anyone got references (or ideas/recommendations) for how to perform #data #augmentation on #scrnaseq data (to use in training #ann)?
This is the only paper I could find, but maybe I am not searching for the right thing...
All over the world, voters should know, that whenever politicians talk about immigrants, it is because they have no solutions to the problems that matter most.
Healthcare crisis in the UK? Talk about immigrants.
Children getting shot because of idiotic gun laws in the US? Talk about immigrants.
"Look over there! Someone is coming too eat you cake!", is the oldest trick in the book, and politicians use it for the sole purpose of moving attention away from their own political incompetence.
Senior lecturer at Edinburgh University and Zhejiang-Edinburgh Joint Institute (ZJE).
Undergraduate Programme Coordinator, Biomedical Informatics at ZJE.
I teach #imageanalysis & #dataanalysis with #RStats & #python.
My research is focused on how #heterogeneous behaviour in #pituitary (and other) cells shapes their function as a population.
I'm also very interested in #reproducibility and #openscience.